PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000598428
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family WRKY
Protein Properties Length: 81aa    MW: 9316 Da    PI: 10.505
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000598428genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.63.9e-31460359
                   -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY  3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
                   Dg++WrKYGqK+vkg+++prsYYr  s +C+v+k+ver ++dpk++++tYeg+Hnh+
  MDP0000598428  4 DGFRWRKYGQKVVKGNPYPRSYYRXXSLKCNVRKHVERVSDDPKAFITTYEGKHNHD 60
                   9*******************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081132.535162IPR003657WRKY domain
SMARTSM007745.6E-32261IPR003657WRKY domain
SuperFamilySSF1182901.19E-25262IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.1E-30362IPR003657WRKY domain
PfamPF031064.7E-25460IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 81 aa     Download sequence    Send to blast
MTGDGFRWRK YGQKVVKGNP YPRSYYRXXS LKCNVRKHVE RVSDDPKAFI TTYEGKHNHD  60
IPLRNAHTGA SDKDTTKQKP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-301621677Probable WRKY transcription factor 4
2lex_A2e-301621677Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.116543e-98stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0201097e-78KJ020109.1 Malus hybrid cultivar TTG2 protein (TTG2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009342013.12e-50PREDICTED: probable WRKY transcription factor 58
RefseqXP_009342023.13e-48PREDICTED: probable WRKY transcription factor 26
SwissprotQ9XI905e-29WRKY4_ARATH; Probable WRKY transcription factor 4
SwissprotQ9ZQ704e-29WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLM5VZ011e-43M5VZ01_PRUPE; Uncharacterized protein
STRINGPOPTR_0006s13550.12e-36(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71183449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.12e-30WRKY DNA-binding protein 3